CCP4 Study Weekend 2020

CCP4 Study Weekend 2020

Agenda

Talk abstracts are to be found by clicking on the speaker name.

  Go
  • Closed  Closed
  • Optional  Optional
  • 07/01/20
  •  

    Lecture

    14:30  -  14:40
    DLS MX User meeting - Overview of MX facilities and Diamond II update  (DLS User 1)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    14:40  -  15:00
    DLS MX User meeting - In-situ crystallography at VMXi  (DLS User 2)
    EMCC Lecture Theatre
     Optional  Closed 
    15:00  -  15:20
    DLS MX User meeting - Data collection with Eiger detectors  (DLS User 3)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:20  -  15:40
    DLS MX User meeting - Update on automation  (DLS User 4)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:40  -  16:00
    DLS MX User meeting - Recent developments in DIALS: symmetry, scaling and more  (DLS User 5)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Break

    16:00  -  16:30
    DLS MX User meeting - Tea & Coffee break  (DLS T&C)
     Optional  Closed 
     

    Lecture

    16:30  -  16:50
    DLS MX User meeting - Structural Biology at the Rosalind Franklin Institute  (DLS User 6)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    16:50  -  17:10
    DLS MX User meeting - Preparing samples for data collection at VMXm  (DLS User 7)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:10  -  17:25
    DLS MX User meeting - Current XFELs and plans for UK XFEL  (DLS User 8)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:25  -  17:40
    DLS MX User meeting - Serial crystallography: What’s possible at Diamond?  (DLS User 9)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:40  -  17:55
    DLS MX User meeting - Planning for serial experiments  (DLS User 10)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:55  -  18:10
    DLS MX User meeting - Future possibilities for serial structural biology at I24  (DLS User 11)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    18:10  -  19:00
    DLS MX User meeting - Discussion by DUC representatives  (DLS User 12)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Private dinner

    19:30  -  23:59
    CCP4 Working Group 1 dinner  (CCP4 WG1 dinner)
    EMCC Banqueting Suite
    CCP4 WG1 dinner is open to members of WG1 plus STFC and Diamond staff and speakers and organisers of the CCP4 Study Weekend. It will commence at 19:30 with a drinks reception before at 19:00.
     Optional  Closed 
     

    Networking event

    20:00  -  23:59
    CCP4 pre-SW2020 Networking event  (CCP4 pre-SW2020)
    EMCC Lecture Theatre
    Following the success of previous years, there will be a Networking Event held on Tuesday 7th January at 20:00 in the Main Lecture theatre of EMCC. Any delegates who have already arrived on the Tuesday and who are not already attending the WG1/Speakers dinner are welcome to attend. It will be an free, informal event and pizza, chips and puddings will be served.
     Optional  Closed 
  • 08/01/20
  •  

    Lecture

    09:00  -  09:15
    What's New in CCP4 in 2020?  (What'sNew1)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Private meeting

    09:00  -  10:30
    CCP4 Working Group 1 meeting  (CCP4 WG1)
    EMCC Gallery
     Optional  Closed 
     

    Lecture

    09:15  -  09:40
    What's New in CCP4? - DIALS 2.0: from images to MTZ files  (What'sNew2)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    09:40  -  10:05
    What's New in CCP4? - Improved validation and deposition in CCP4i2  (What'sNew3)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    10:05  -  10:30
    What's New in CCP4 - CCP4Cloud  (What'sNew4)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Break

    10:30  -  11:00
    Tea & Coffee Break  (T&C)
     

    Lecture

    11:00  -  11:10
    Welcome  (Welcome)
    EMCC Lecture Theatre
    11:10  -  11:35
    Introduction to model building at high resolution  (Intro talk 2)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    11:35  -  12:00
    Introduction to model building into EM maps  (Intro 1)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    12:00  -  12:30
    Session 1 - Cryo-EM map density modification and model-building  (Phenix)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    12:30  -  12:50
    Session 1 - Model Building in SHELXE  (SHELXE)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    12:50  -  13:10
    Session 1 - Do you want to build a protein? (Or a software package?)  (EM & MX maps)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Q&A Session

    13:10  -  13:15
    Session 1 - Questions & Discussion  (S1 Questions)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Lunch

    13:15  -  14:45
    Lunch  (Lunch)
    EMCC Banqueting Suite
    Lunch break - including Lunchtime Bytes
     Optional  Closed 
     

    tutorial

    14:00  -  14:45
    Lunchtime Bytes  (LTB1)
    EMCC Break Out rooms
    Lunchtime Bytes are informal sessions held over the lunch period where developers of the CCP4 software are available for discussion and demonstrations. Please note: There will be 45 minutes at the start of lunch where no lunchtime bytes will take place to ensure speakers and delegates can get something to eat, after which the bytes will commence. Delegates are advised to try to spread out their attendance at the bytes to prevent oversubscription. The lunchtime Bytes will be signposted and a full schedule will be included in conference packs.
     Optional  Closed 
     

    Lecture

    14:45  -  15:15
    Session 2 - Densities in X-ray crystallography and electron microscopy  (Sim and diff)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:15  -  15:45
    Session 2 - EM Model Refinement  (EM Refinement)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:45  -  16:05
    Session 2 - Using Coot in CryoEM Reconstructions  (Coot)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    16:05  -  16:25
    Session 2 - Low resolution model building with ISOLDE  (ISOLDE)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    16:25  -  16:45
    Session 2 - CootVR  (CootVR)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Break

    16:45  -  17:15
    Tea & Coffee Break  (T&C2)
     Optional  Closed 
     

    Lecture

    17:15  -  17:35
    Session 3 - Carbohydrates  (Carbohydrates)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:35  -  17:55
    Session 3 - Metal ions in protein structures: the MetalPDB database  (MetalPDB)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    17:55  -  18:15
    Session 3 - The Missing Link: Dealing with Covalent Linkages  (Ligands)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    18:15  -  18:35
    Session 3 -Fragalysis: an open-source web-platform in the cloud  (Fragalysis)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Q&A Session

    18:35  -  18:40
    Session 3 - General discussion  (S3 Discussion)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Conference Dinner

    19:30  -  23:59
    CCP4 SW2020 Conference dinner  (CCP4 Conf dinner)
    EMCC Banqueting Suite
    Conference dinner for all delegates followed by the now traditional post-dinner ceilidh!
  • 09/01/20
  •  

    Lecture

    09:00  -  09:30
    Session 4 - Recent developments in cryoEM model fitting and validation with TEMPy  (EM)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    09:30  -  10:00
    Session 4 - Methods for identifying cryoEM density features (at low or high resolution)  (Manchester)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    10:00  -  10:20
    Session 4 - Vagabond: a new project for macromolecular model refinement  (Vagabond)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    10:20  -  10:50
    Session 4 - Biomolecular simulations at low resolution from cryoEM density maps  (FE molecular dynamics)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Q&A Session

    10:50  -  11:00
    Session 4 - Discussion  (S4 Discussion)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Break

    11:00  -  11:30
    Tea & Coffee Break  (T&C3)
     Optional  Closed 
     

    Lecture

    11:30  -  12:00
    Session 5 - Validating near atomic and atomic resolution cryoEM structures  (EM Validation)
    Speakers:
     Optional  Closed 
    12:00  -  12:30
    Session 5 - Using validation to keep the PDB clean  (PDB validation)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    12:30  -  12:50
    Session 5 - Structural alphabets for conformational analysis of nucleic acids  (nucleic acid validation)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    12:50  -  13:10
    Session 5 - Local and Global Analysis of Macromolecular B values  (B-factors)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Q&A Session

    13:10  -  13:15
    Session 5 - General discussion  (S5 discussion)
    EMCC Lecture Theatre
     Optional  Closed 
     

    Lunch

    13:15  -  14:45
    Lunch  (Lunch2)
    EMCC Banqueting Suite
     Optional  Closed 
     

    tutorial

    14:00  -  14:45
    Lunchtime Bytes  (LTB2)
    EMCC Break Out rooms
    Lunchtime Bytes are informal sessions held over the lunch period where developers of the CCP4 software are available for discussion and demonstrations. Please note: There will be 45 minutes at the start of lunch where no lunchtime bytes will take place to ensure speakers and delegates can get something to eat, after which the bytes will commence. Delegates are advised to try to spread out their attendance at the bytes to prevent oversubscription. The lunchtime Bytes will be signposted and a full schedule will be included in conference packs.
     Optional  Closed 
     

    Lecture

    14:45  -  15:10
    Session 6 - PDB-REDO  (PDB-REDO)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:10  -  15:15
    Session 6 - Invitation to CAPRI  (CAPRI)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:15  -  15:35
    Session 6 - Immersive tools for interactive structure exploration and manipulation: from game engine  (VR)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
    15:35  -  15:55
    Session 6 - Mol*:high performance macromolecular data delivery and visualization toolkit for the web  (MOL*)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Q&A Session

    15:55  -  16:00
    Session 6 - Discussion  (S6 Discussion)
     Optional  Closed 
     

    Lecture

    16:00  -  16:30
    Closing talk - Phospho Biomedical Animation  (Phospho)
    EMCC Lecture Theatre
    Speakers:
     Optional  Closed 
     

    Course End

    16:30  -  16:40
    Meeting wrap-up  (Meeting wrap-up)
    EMCC Lecture Theatre
     Optional  Closed 
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